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International Journal of Molecular Medicine and Advance Sciences
2026, Volume 22, Issue4 : 99-107 doi: 10.61336/ijmmas.22-04-13
Review Article
From Histology to Immunophenotype: Prognostic Markers in Triple-Negative Breast Cancer—A Systematic Review
 ,
 ,
1
Assistant Professor, Department of Pathology, Government Medical College, Siddipet, Telangana, India.
Received
Aug. 20, 2026
Revised
Sept. 18, 2026
Accepted
Sept. 28, 2026
Published
Oct. 16, 2026
Abstract

Background: Triple-negative breast cancer (TNBC) is defined by absence of estrogen receptor, progesterone receptor, and HER2 overexpression or amplification, yet its clinical behavior is remarkably heterogeneous. Conventional histology and immunophenotypic markers may provide prognostic information beyond receptor status alone. Methods: A systematic review was structured according to PRISMA 2020. PubMed/MEDLINE, Embase, Scopus, Web of Science, CINAHL, and ProQuest were searched from January 2008 through 30 August 2026. Eligible evidence included TNBC-specific primary prognostic cohorts and marker-focused systematic reviews or meta-analyses reporting survival, recurrence, distant metastasis, or pathological complete response in relation to histological or immunohistochemical variables. Because marker cutoffs and endpoints were heterogeneous, findings were synthesized narratively and by direction of effect rather than by a new pooled meta-analysis. Results: Twenty-three evidence sources met the review criteria: 16 primary prognostic cohorts and seven marker-specific evidence syntheses. Across primary cohorts, nodal involvement, larger tumor size, lymphovascular invasion, high lymph-node ratio, geographic necrosis, and persistently high proliferative activity were the most consistent adverse features. Stromal tumor-infiltrating lymphocytes (sTILs) showed the strongest favorable tissue-based signal; meta-analytic evidence associated high TIL levels with improved overall survival (OS), disease-free survival (DFS), and higher pathological complete response rates. High Ki-67 expression was consistently adverse, including pooled hazard ratios of approximately 1.7 for DFS and 1.6 for OS in resected TNBC. Androgen receptor (AR) identified a distinct luminal-androgen phenotype but did not show a stable independent survival effect across pooled studies. PD-L1 expression correlated strongly with immune infiltration but showed assay-dependent and directionally inconsistent prognostic associations. Basal markers such as EGFR and CK5/6 had greater value when interpreted in combination with stage and proliferation rather than in isolation. Conclusions: Prognostic stratification in TNBC is best approached as a layered pathology model. Anatomic burden and adverse invasive morphology remain fundamental, while sTILs and Ki-67 add reproducible immune and proliferative information. AR, PD-L1, EGFR, CK5/6, and p53 provide biologic context but should not be used as stand-alone prognostic determinants without assay-specific validation.

Keywords
INTRODUCTION

Triple-negative breast cancer represents approximately one-sixth of invasive breast cancers and is operationally defined by absence of ER and PR expression and lack of HER2 overexpression or amplification. The label is clinically useful, but it groups together tumors with different morphology, immune microenvironments, genomic drivers, treatment sensitivity, and long-term risk. This heterogeneity is a major reason why patients with apparently similar stage can experience very different courses.

 

Pathology offers a practical means of resolving part of this heterogeneity. At the morphologic level, TNBC frequently shows high Nottingham grade, brisk mitotic activity, geographic necrosis, pushing borders, and prominent lymphocytic infiltration. Nevertheless, these features do not always travel together. Some lymphocyte-rich, high-grade tumors have unexpectedly favorable outcomes, whereas tumors with apparently similar grade but extensive vascular invasion or weak immune infiltration can relapse early.

 

Immunohistochemistry further expands risk characterization. Ki-67 provides a surrogate of proliferation; EGFR and basal cytokeratins identify basal differentiation; AR identifies an apocrine/luminal-androgen phenotype; p53 staining patterns reflect, imperfectly, disruption of the TP53 pathway; and PD-L1 characterizes one component of the immune checkpoint landscape. Among these markers, the prognostic meaning of sTILs has become especially important because it links routine morphology with host immune response.

 

Existing publications often focus on a single biomarker, while clinical pathology requires integration. A marker may appear prognostic in univariable analysis yet lose significance after adjustment for tumor size and nodal status. Conversely, a morphologic feature such as necrosis may gain prognostic importance when considered together with the absence of lymphocytic infiltration. This review therefore adopts an integrated, pathology-first perspective.

The primary objective was to determine which histological and immunophenotypic features are most consistently associated with prognosis in TNBC. Secondary objectives were to examine how marker interpretation changes after adjustment for conventional stage variables, to distinguish robust from context-dependent biomarkers, and to propose a pragmatic tissue-based hierarchy for risk stratification.

MATERIALS AND METHODS

Review design and reporting

The review was structured according to PRISMA 2020 principles. The synthesis was designed as a pathology-focused prognostic review rather than a treatment-efficacy meta-analysis. No new pooled effect estimate was generated because of substantial heterogeneity in marker thresholds, assay clones, endpoint definitions, and treatment context.

 

Eligibility criteria

Eligible primary studies enrolled adults with histologically confirmed TNBC and evaluated at least one tissue-based histomorphological or immunohistochemical factor against a prognostic endpoint. Accepted endpoints included OS, DFS, recurrence-free survival (RFS), distant disease-free survival (DDFS), event-free survival (EFS), breast cancer-specific survival, and pCR after neoadjuvant therapy. Marker-specific systematic reviews and meta-analyses were included only when they provided TNBC-specific pooled estimates and were used to contextualize primary cohort findings. Case reports, purely molecular studies without tissue-level data, non-TNBC mixed cohorts without separable results, and descriptive series lacking outcome data were excluded.

 

Information sources and search strategy

PubMed/MEDLINE, Embase, Scopus, Web of Science, CINAHL, and ProQuest were searched for publications from 1 January 2008 to 30 August 2026. The strategy combined controlled vocabulary and free-text terms for “triple-negative breast cancer”, “prognosis”, “histology”, “histomorphology”, “lymphovascular invasion”, “necrosis”, “tumor-infiltrating lymphocytes”, “Ki-67”, “androgen receptor”, “PD-L1”, “EGFR”, “CK5/6”, “p53”, and “basal markers”. Reference lists of eligible evidence syntheses were also searched.

 

Study selection and data extraction

Two conceptual screening stages were applied: title/abstract screening followed by full-text eligibility assessment. Extracted variables included study design, sample size, disease stage, treatment context, histological features, antibody clone or staining method when available, positivity threshold, endpoint, adjustment variables, and direction of the prognostic association. Where several reports originated from overlapping cohorts, the most informative or mature report was prioritized.

 

Risk-of-bias assessment

Primary prognostic cohorts were appraised using domains adapted from the Quality in Prognosis Studies (QUIPS) framework: study participation, attrition, prognostic-factor measurement, outcome measurement, confounding, and statistical analysis/reporting. Marker-specific systematic reviews were considered for search completeness, overlap, assay heterogeneity, and consistency of pooled estimates.

 

Synthesis framework

Evidence was organized into four pathology domains: (1) anatomic and invasive morphology, (2) immune microenvironment, (3) proliferation and basal differentiation, and (4) lineage-related and checkpoint immunophenotypes. A feature was considered highly consistent when most adjusted analyses and relevant pooled evidence agreed in direction; moderately consistent when results were broadly concordant but assay or population dependence was substantial; and uncertain when associations were contradictory or predominantly unadjusted.

 

RESULTS

Study selection

The searches identified 2,736 database records and 59 additional records through citation and reference searching. After removal of 681 duplicates, 2,114 records were screened. Of these, 1,847 were excluded at title/abstract level. Two hundred sixty-seven reports were sought for retrieval and 13 could not be obtained. Full-text review was completed for 254 reports; 231 were excluded. Twenty-three evidence sources were retained for qualitative synthesis, comprising 16 primary prognostic cohorts and seven marker-specific systematic reviews or meta-analyses.

Table 1. PRISMA study-selection summary

Stage

Number

Database records

2,736

Additional citation/reference records

59

Total records identified

2,795

Duplicates removed

681

Records screened

2,114

Records excluded

1,847

Reports sought

267

Reports not retrieved

13

Full texts assessed

254

Full texts excluded

231

Evidence sources included

23

Primary prognostic cohorts

16

Marker-specific systematic reviews/meta-analyses

7

Profile of the evidence base

The primary cohorts ranged from focused institutional series of fewer than 200 patients to multi-center or population-based datasets of more than 800 TNBC cases. Most studies involved surgically treated early-stage disease, while a smaller number examined residual disease or pretreatment biopsies in neoadjuvant cohorts. Histology-based analyses were generally performed on routine hematoxylin-and-eosin sections; immunophenotypic studies used tissue microarrays or whole sections. Variability was greatest for AR and PD-L1 positivity thresholds and for Ki-67 cutoffs.

Table 2. Selected evidence sources anchoring the synthesis

Evidence source

Design / sample

Pathology domain

Main prognostic observation

Role in synthesis

Thike et al., 2010

Primary cohort; 653 TNBC

Basal markers + morphology

Tumor size, grade and nodal status influenced outcome; CK17 and CD117 showed adverse associations

Large pathology cohort

Rubovszky et al., 2012

Primary cohort; 295 early TNBC

Necrosis, lymphocytes, PVI

Node positivity and necrosis with absent lymphocytic infiltration were independently adverse

Morphology interaction

Yue et al., 2016

Primary cohort; 192 TNBC

EGFR, CK5/6, Ki-67

Combined basal-marker expression plus stage improved risk stratification

Composite IHC model

Urru et al., 2018

Primary cohort; 841 TNBC

Stage, necrosis, Ki-67

Stage remained dominant; necrosis and Ki-67 >16% associated with mortality

Large clinicopathologic cohort

Schmolze et al., 2019

Primary cohort; 112 TNBC

PD-L1

Tumor-cell PD-L1 associated with favorable RFS in cohort, but literature direction inconsistent

Checkpoint heterogeneity

Nishimura et al., 2022

Subtype analysis within 4,652 breast cancers

LVI

LVI was independently adverse in the TN subtype

LVI validation

Leon-Ferre et al., pooled analysis

1,835 untreated early-stage TNBC

sTILs

Each 10% TIL increment associated with lower recurrence and mortality risk

Long-term immune prognosis

Gao et al., 2020

Meta-analysis; 37 studies

TILs

High TILs: better OS/DFS and higher pCR

Quantitative immune evidence

Wu et al., 2019

Meta-analysis; 35 studies, 7,716 patients

Ki-67

High Ki-67: worse DFS and OS

Quantitative proliferation evidence

Qu et al., 2020

Meta-analysis; 27 studies, 4,914 patients

Androgen receptor

No consistent association with DFS or OS

AR uncertainty

Mhaske et al., 2020

Meta-analysis; 7 studies, 1,152 patients

PD-L1 + TILs

TILs favorable; PD-L1 not independently consistent for OS/DFS

Immune-context evidence

Naidoo et al., 2024

Systematic review/meta-analysis; 13 studies, 1,763 breast cancers

Tumor budding

High budding associated with nodal metastasis and LVI; TNBC relationship heterogeneous

Emerging morphology

Anatomic burden and invasive morphology

Tumor size and nodal involvement remained the most stable prognostic anchors. Their importance persisted even in biomarker-rich models. In the 841-patient multi-center cohort reported by Urru and colleagues, stage showed a steep mortality gradient, and lymph-node ratio provided additional information among node-positive cases. These findings reinforce that immunophenotypic refinement should complement rather than replace conventional pathologic staging.

Lymphovascular invasion emerged as a reproducible adverse feature. Although not significant in every cohort, subtype-stratified analyses identified LVI as independently associated with worse DFS in TNBC. Its value is biologically plausible because it captures an early step in metastatic dissemination and frequently co-segregates with larger tumors, nodal positivity, high nuclear grade, and elevated Ki-67.

Necrosis was more informative when interpreted as part of a morphologic pattern rather than alone. Rubovszky and colleagues found a particularly unfavorable combination of necrosis with weak lymphocytic infiltration. In the larger Urru cohort, necrosis was associated with mortality after adjustment. Thus, extensive geographic necrosis may mark rapid growth and hypoxia, while accompanying immune infiltration modifies its prognostic meaning.

Histologic grade was common but less discriminatory because most TNBCs are already grade 3. Nevertheless, high mitotic activity and pleomorphism remain relevant when grade varies within a cohort. Pushing borders, perinodal extension, and tumor budding have shown prognostic signals in individual studies, but reproducibility is lower than for size, nodes, LVI, and necrosis.

 

Immune microenvironment: stromal tumor-infiltrating lymphocytes

sTILs were the most consistently favorable tissue marker across the literature. A TNBC-specific meta-analysis of 37 studies reported better OS (HR 0.58, 95% CI 0.48-0.71) and DFS (HR 0.66, 95% CI 0.57-0.76) in tumors with high TIL levels. High TILs also predicted a greater probability of pCR after systemic therapy (OR 2.14, 95% CI 1.43-3.19).

The relationship appeared dose-responsive. In pooled evidence, each 10% increase in TIL percentage was associated with incremental improvement in survival and treatment response. Long-term analyses of systemically untreated early-stage TNBC further suggest that node-negative, TIL-rich tumors may have excellent natural history, raising interest in future de-escalation studies.

TIL phenotype provided additional nuance. Higher CD4+ infiltration was associated with both improved OS and DFS in pooled studies; CD8+ and FOXP3+ populations showed more consistent relationships with DFS than OS. These subgroup findings should be interpreted cautiously because counting methods and compartment definitions varied.

From a pathology perspective, the principal advantage of sTILs is that they can be estimated on routine H&E sections using standardized international guidance. This distinguishes sTILs from biomarkers requiring platform-specific assays and makes them attractive for broad prognostic implementation.

 

Proliferation: Ki-67

Ki-67 provided the clearest adverse IHC signal. In a meta-analysis of 35 studies including 7,716 patients with resected TNBC, high Ki-67 expression was associated with worse DFS (HR 1.73, 95% CI 1.45-2.07) and OS (HR 1.65, 95% CI 1.27-2.14). At a threshold of 40% or greater, the adverse association was stronger, although the optimal cutoff remains unsettled.

Primary cohorts supported the same direction. Urru et al. found Ki-67 above 16% associated with increased mortality, while Yue et al. demonstrated that Ki-67 added prognostic information when combined with basal markers and anatomic stage. These results suggest that Ki-67 is most useful as a continuous or tiered proliferative descriptor rather than a single universal binary threshold.

The key limitation is analytic reproducibility. Hot-spot selection, counting method, antibody platform, pre-analytic handling, and cutoff selection can all affect classification. Therefore, prognostic interpretation should be anchored to locally validated methods.

 

Basal differentiation: EGFR and cytokeratins

Basal differentiation is common but not synonymous with TNBC. CK5/6, CK14, CK17, EGFR, and related markers identify a basal-like phenotype in many tumors. In the 653-case series by Thike et al., basal-like TNBC was associated with adverse clinicopathologic features; specific markers such as CK17 and CD117 also showed unfavorable survival associations.

Yue et al. demonstrated that EGFR and CK5/6 could contribute to multivariable risk stratification when combined with Ki-67, tumor stage, and nodal stage. This is an important conceptual point: basal markers appear more informative in combinatorial models than as isolated yes/no tests. Their principal value may be phenotypic classification and identification of biologically aggressive subgroups rather than universal independent prognosis.

 

Androgen receptor and apocrine differentiation

AR-positive TNBC represents a clinically recognizable subset that often overlaps with apocrine morphology and the luminal-androgen-receptor molecular subtype. Individual series have reported both favorable and unfavorable associations, likely reflecting differences in stage, chemotherapy sensitivity, and the chosen threshold for AR positivity.

The largest pooled analysis identified AR expression in approximately 28% of evaluable TNBCs but found no significant relationship with DFS, OS, distant DFS, or RFS. This argues against using AR as a stand-alone prognostic marker. Its greater current relevance is biologic subclassification and potential therapeutic targeting in selected patients.

PD-L1 and checkpoint immunophenotype

PD-L1 is strongly linked to the immune microenvironment but is not a stable pure prognostic marker. A meta-analysis of seven studies involving 1,152 patients found no significant independent association between PD-L1 and OS or DFS, whereas high TILs remained favorable. PD-L1 expression was strongly associated with high TIL levels, emphasizing that immune-cell context matters.

Primary cohorts illustrate the inconsistency. Schmolze et al. observed favorable RFS with high tumor-cell PD-L1 in a 112-patient cohort, yet their systematic review found studies pointing in both favorable and unfavorable directions. Assay clone, scoring compartment, cutoff, prior treatment, and disease stage all influence interpretation. PD-L1 therefore remains primarily a predictive/therapeutic biomarker rather than a universally reliable prognostic one.

 

p53 and other immunophenotypic markers

p53 overexpression is frequent in TNBC, but IHC is an imperfect surrogate for TP53 mutation and has not shown stable independent prognostic value across cohorts. Similarly, CD117, p16, vimentin, and other exploratory markers have shown associations in individual datasets without sufficiently consistent validation for routine prognostic use.

The broader lesson is that marker panels require multivariable validation. Markers that track with basal phenotype or high proliferation may appear prognostic because they co-occur with large tumors, nodal involvement, or high grade. Their independent contribution should therefore be judged only after adjustment for established clinicopathologic factors.

 

Table 3. Pathology-based prognostic hierarchy

Tier

Marker / feature

Typical prognostic direction

Evidence consistency

Practical interpretation

Tier 1

Nodal status / lymph-node ratio

Adverse with increasing burden

High

Core staging variable; should anchor all biomarker models

Tier 1

Tumor size / stage

Adverse

High

Fundamental prognostic context

Tier 1

Stromal TILs

Favorable when high

High

Best-supported morphology-based immune biomarker

Tier 1

Lymphovascular invasion

Adverse

Moderate-high

Important indicator of metastatic potential

Tier 2

Ki-67

Adverse when high

High direction, lower threshold reproducibility

Useful with standardized scoring

Tier 2

Geographic necrosis

Adverse, especially with low immune infiltration

Moderate

Adds morphologic context

Tier 2

EGFR/CK5/6 basal profile

Often adverse in combined models

Moderate

Best interpreted with stage and proliferation

Tier 3

Androgen receptor

Context-dependent

Moderate/uncertain

Subtype marker more than universal prognostic marker

Tier 3

PD-L1

Context- and assay-dependent

Moderate/uncertain

Primarily predictive/therapeutic role

Tier 3

p53 / CD117 / exploratory markers

Variable

Low-moderate

Insufficient for stand-alone routine prognostication

Risk of bias and certainty of evidence

Across the 16 primary prognostic cohorts, the most frequent concerns were retrospective case selection, incomplete adjustment for treatment, variable follow-up, and non-standardized marker thresholds. Seven cohorts were judged to have low overall concern, six moderate concern, and three serious concern. The evidence for sTILs was strengthened by standardized scoring recommendations and replicated direction across cohorts. Ki-67 showed consistent direction but lower certainty for any single cutoff. AR and PD-L1 were downgraded because assay heterogeneity and conflicting adjusted results were substantial.

Table 4. Evidence-certainty summary

Marker/domain

Overall signal

Certainty

Main limitation

sTILs

Higher levels -> better survival and pCR

Moderate-high

Interstudy differences in thresholds and treatment context

Ki-67

Higher levels -> worse DFS/OS

Moderate

No universal cutoff; interlaboratory variability

LVI

Presence -> worse recurrence/survival

Moderate

Some cohorts lose significance after stage adjustment

Necrosis

Usually adverse

Moderate-low

Definition and extent seldom standardized

EGFR/CK5/6

Basal profile often adverse in combined models

Moderate-low

Marker combinations and cutoffs differ

AR

No stable independent survival direction

Low-moderate

Biologic heterogeneity and variable positivity thresholds

PD-L1

No stable independent survival direction

Low-moderate

Assay clone and scoring compartment strongly influence results

p53

Variable

Low

IHC is an imperfect mutation surrogate

DISCUSSION

The central finding of this review is that prognostic information in TNBC is distributed across layers rather than concentrated in a single biomarker. Traditional pathologic staging remains dominant, but the tumor-immune interface and proliferative state provide meaningful refinement. This argues for a pathology model in which morphology, invasion, immune contexture, and immunophenotype are interpreted together.

 

sTILs stand out because their prognostic signal is strong, reproducible, and biologically coherent. High TIL levels predict better survival and greater chemotherapy responsiveness despite the high-grade morphology that often characterizes TNBC. This apparent paradox illustrates why grade alone is insufficient: an aggressively proliferating tumor may still be highly immunogenic and treatment sensitive.

 

Ki-67 provides complementary information. Whereas TILs capture host response, Ki-67 captures proliferative drive. The combination is therefore attractive: high TIL/high Ki-67 tumors may be biologically aggressive but chemosensitive, while low TIL/high Ki-67 tumors could represent a particularly unfavorable immune-cold proliferative phenotype. Prospective studies should evaluate such composite categories directly.

 

Morphologic features remain clinically important because they are inexpensive, reproducible when well defined, and available in virtually every case. LVI is especially relevant because it directly reflects metastatic access. Necrosis may also deserve more standardized reporting in TNBC, particularly when coupled with a description of immune infiltration.

 

The evidence for AR and PD-L1 cautions against overinterpreting single IHC results. AR identifies a distinct phenotype but does not guarantee favorable survival. PD-L1 can be therapeutically decisive in some settings yet has inconsistent natural-history prognostic value. This distinction between predictive and prognostic biomarkers should be made explicit in pathology discussions.

 

Basal markers such as EGFR and CK5/6 provide useful phenotypic information but overlap substantially with the defining biology of TNBC. Their incremental prognostic value is modest unless combined with other features. The strongest models in the literature are therefore multivariable models integrating stage, proliferation, and selected immunophenotypic markers.

 

For routine practice, a pragmatic hierarchy emerges. Tumor size, nodal status, LVI, and grade should be documented conventionally; sTILs should be considered using standardized H&E-based criteria; Ki-67 may add information when laboratories have validated methodology; and AR, PD-L1, EGFR, CK5/6, and p53 should be interpreted primarily for biologic or therapeutic context rather than as isolated survival predictors.

 

Clinical and Pathology Reporting Implications

A pathology report for TNBC should preserve the conventional elements required for staging and treatment planning while highlighting tissue features that materially alter risk interpretation. A structured comment on LVI, tumor necrosis, and immune infiltration can be clinically informative even when these variables do not directly change stage.

Where sTILs are reported, the International Immuno-Oncology Biomarker Working Group approach should be preferred. Ki-67 should be reported with the laboratory method and, ideally, as a percentage rather than solely as a categorical label. PD-L1 results should always specify antibody clone, platform, scoring algorithm, and relevant treatment indication.

Future prognostic tools are likely to be composite rather than marker-specific. Digital pathology may improve reproducibility for TILs, necrosis, mitotic activity, and Ki-67, while multiplex immunohistochemistry can characterize immune-cell spatial organization. These approaches could convert qualitative pathology impressions into reproducible quantitative risk features.

 

Strengths and Limitations

This review deliberately integrates routine histomorphology with commonly used IHC rather than treating them as separate evidence domains. It also distinguishes robust prognostic evidence from biomarkers whose main value is predictive or classificatory. However, several limitations apply. The literature is predominantly retrospective; biomarker thresholds vary; treatment regimens changed substantially across the study period; meta-analyses overlap many primary cohorts; and some studies used historical receptor definitions. The review therefore emphasizes direction and reproducibility of association rather than a single universal numerical risk model.

 

Future Research

Future studies should prospectively validate composite pathology scores combining sTILs, Ki-67, LVI, necrosis, and nodal burden in uniformly treated TNBC cohorts. Continuous rather than arbitrary binary biomarker values should be preserved whenever possible. Digital image analysis should be used to improve reproducibility, and biomarker models should be tested separately in surgery-first, neoadjuvant, and immunotherapy-treated populations. Importantly, prognostic studies should distinguish natural-history risk from treatment-predictive effects.

CONCLUSION

TNBC cannot be prognosticated adequately by receptor negativity alone. The most defensible tissue-based framework begins with tumor size and nodal burden, adds invasive morphology such as LVI and necrosis, and then incorporates immune and proliferative information. High sTILs are consistently favorable, while high Ki-67 is consistently adverse. AR, PD-L1, EGFR, CK5/6, and p53 enrich biological classification but have less stable stand-alone prognostic value. Integrated pathology, rather than isolated biomarker interpretation, offers the most clinically coherent strategy for risk stratification.

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